A short script to use the nontarget pattern.match function to print useful information about clusters.
You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
|
|
# Patternmatch
This is a short R pattern.search wrapper that takes in a CSV file containingHRMS Peaks and prints all of the fragment numbers that may contain isotopes of one'schoosing (preferably halogenated compounds).
## Installation
The script has the following dependencies:- latest version of the [Nontarget R Package](https://github.com/blosloos/nontarget) (This should be installedthrough the devtools package)- [purrr](https://www.rdocumentation.org/packages/purrr/versions/0.2.5)- [enviPat](https://rdocumentation.org/packages/enviPat/versions/2.2)- [stringr](https://www.rdocumentation.org/packages/stringr/versions/1.4.0)- [parallel](https://www.rdocumentation.org/packages/parallel/versions/3.6.2)
Before running/configuring the script, call `make` while in the `/src`directory or copy `script.def.R` to `script.R`.
## Additional Notes
In order to make the search run in linear time, as of right now, the entiredata table will be sorted before searching.
|
