2 Commits
5e8e011c42
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4fb59e676f
Author | SHA1 | Message | Date |
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Juni Kim | 4fb59e676f |
migrations work properly
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1 year ago |
Juni Kim | d376a1c6ab |
data entry methods edited
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1 year ago |
11 changed files with 101 additions and 37 deletions
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122-5-23.txt
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0__init__.py
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27app.py
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5entrypoint.sh
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56migrations/versions/1a0a82192181_.py
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17poetry.lock
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1pyproject.toml
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3templates/admin.html
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4templates/batchadd.html
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4templates/batchquery.html
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9validate.py
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# Changes to Make |
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- Show how to make a network request in R to the server |
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- Version Control (what date a compound was added) |
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- createdAt, but configurable. DONE |
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- Compare the database to the list of compunds and you only want compounds |
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from that date or before? DONE |
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- Emphasizing Local? - Accessible through a url. DONE, all fields accessible. |
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- Shiny app |
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- Permissions System (revoke, access API keys) |
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@ -0,0 +1,56 @@ |
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"""empty message |
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Revision ID: 1a0a82192181 |
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Revises: 7e9528cf1416 |
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Create Date: 2023-04-11 19:01:00.565936 |
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""" |
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from alembic import op |
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import sqlalchemy as sa |
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# revision identifiers, used by Alembic. |
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revision = '1a0a82192181' |
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down_revision = '7e9528cf1416' |
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branch_labels = None |
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depends_on = None |
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def upgrade(): |
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# ### commands auto generated by Alembic - please adjust! ### |
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with op.batch_alter_table('chemical', schema=None) as batch_op: |
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batch_op.add_column(sa.Column('person_name', sa.String(), nullable=False)) |
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batch_op.add_column(sa.Column('standard_grp', sa.String(), nullable=False)) |
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batch_op.add_column(sa.Column('metabolite_name', sa.String(), nullable=False)) |
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batch_op.alter_column('inchikey', |
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existing_type=sa.VARCHAR(), |
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nullable=False) |
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batch_op.alter_column('final_adduct', |
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existing_type=sa.VARCHAR(), |
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nullable=False) |
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batch_op.alter_column('msms_detected', |
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existing_type=sa.BOOLEAN(), |
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nullable=False) |
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batch_op.drop_column('name') |
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# ### end Alembic commands ### |
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def downgrade(): |
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# ### commands auto generated by Alembic - please adjust! ### |
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with op.batch_alter_table('chemical', schema=None) as batch_op: |
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batch_op.add_column(sa.Column('name', sa.VARCHAR(), nullable=False)) |
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batch_op.alter_column('msms_detected', |
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existing_type=sa.BOOLEAN(), |
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nullable=True) |
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batch_op.alter_column('final_adduct', |
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existing_type=sa.VARCHAR(), |
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nullable=True) |
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batch_op.alter_column('inchikey', |
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existing_type=sa.VARCHAR(), |
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nullable=True) |
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batch_op.drop_column('metabolite_name') |
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batch_op.drop_column('standard_grp') |
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batch_op.drop_column('person_name') |
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# ### end Alembic commands ### |
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