first commit

.gitignore

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+.idea
+/instance
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/

.vscode/.gitignore

@@ -0,0 +1,3 @@
+*
+!settings.json
+!.gitignore

.vscode/settings.json

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+{
+	"editor.defaultFormatter": "esbenp.prettier-vscode",
+	"editor.tabSize": 4,
+	"[python]": {
+		"editor.wordBasedSuggestions": false,
+		"editor.defaultFormatter": null
+	},
+	/*
+  "python.formatting.provider": "autopep8",
+  "python.formatting.autopep8Args": [
+    "--max-line-length",
+    "120",
+    "--experimental"
+  ],
+  */
+	"editor.bracketPairColorization.enabled": true
+}

app.py

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+#!/usr/bin/env python3
+
+from flask import Flask, render_template, session, request, abort, redirect, url_for
+from flask_sqlalchemy import SQLAlchemy
+import bcrypt
+
+db: SQLAlchemy = SQLAlchemy()
+app = Flask(__name__)
+
+app.config["SQLALCHEMY_DATABASE_URI"] = "sqlite:///project.db"
+app.secret_key = '98d31240f9fbe14c8083586db49c19c3a8d3f726'
+
+
+class Admin(db.Model):
+    id = db.Column(db.Integer, primary_key=True)
+    username = db.Column(db.String, unique=True, nullable=False)
+    password = db.Column(db.String, nullable=False)
+    query: db.Query
+
+    @classmethod
+    def generate_password(cls, pw: str):
+        return bcrypt.hashpw(pw, bcrypt.gensalt(12))
+
+    @classmethod
+    def authenticate(cls, username: str, pw: str):
+        user = Admin.query.filter_by(username=username).one_or_none()
+        if user and bcrypt.checkpw(pw, user.password):
+            session['admin'] = user.username
+            return user
+        else:
+            return None
+
+    @classmethod
+    def exists(cls):
+        user = Admin.query.one_or_none()
+        return True if user else False
+
+    @classmethod
+    def authorize(cls):
+        if not session.get('admin'):
+            return redirect(url_for("admin_login"))
+
+# Error Handlers
+
+@app.errorhandler(404)
+def handler_404(msg):
+    return render_template("errors/404.html")
+
+
+@app.errorhandler(403)
+def handler_403(msg):
+    return render_template("errors/403.html")
+
+
+# Admin routes
+@app.route('/admin')
+def admin_root():
+    if login := Admin.authorize():
+        return login
+    return render_template("admin.html", user=session.get("admin"))
+
+
+@app.route('/admin/create', methods=['GET', 'POST'])
+def admin_create():
+    if Admin.exists():
+        if login := Admin.authorize():
+            return login
+    if request.method == "GET":
+        return render_template("register.html")
+    else:
+        username, pw = request.form.get('username'), request.form.get('password')
+        if username is None or pw is None:
+            return render_template("register.html", fail="Invalid Input.")
+        elif db.session.execute(db.select(Admin).filter_by(username=username)).fetchone():
+            return render_template("register.html", fail="Username already exists.")
+        else:
+            db.session.add(Admin(username=username, password=Admin.generate_password(pw)))
+            db.session.commit()
+            return render_template("register.html", success=True)
+
+
+@app.route('/admin/login', methods=['GET', 'POST'])
+def admin_login():
+    if request.method == "POST":
+        username, pw = request.form.get('username', ''), request.form.get('password', '')
+        if Admin.authenticate(username, pw):
+            return render_template("login.html", success=True)
+        else:
+            return render_template("login.html", fail="Could not authenticate.")
+    else:
+        return render_template("login.html")
+
+
+@app.route('/admin/logout', methods=['GET'])
+def admin_logout():
+    session.pop('admin')
+    return redirect(url_for('home'))
+
+
+@app.route("/")
+def home():
+    if Admin.exists():
+        return render_template("index.html")
+    else:
+        return redirect(url_for("admin_create"))
+
+
+@app.route("/search")
+def search():
+    return "searching url"
+
+
+if __name__ == "__main__":
+    db.init_app(app)
+    with app.app_context():
+        db.create_all()
+    app.run(debug=True)

errors.py

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+from flask import render_template, Flask
+
+
+def configure_app(app: Flask):
+    @app.errorhandler(404)
+    def handler_404(msg):
+        return render_template("errors/404.html")
+
+    @app.errorhandler(403)
+    def handler_403(msg):
+        return render_template("errors/403.html")

poetry.lock

@@ -0,0 +1,295 @@
+[[package]]
+name = "autopep8"
+version = "2.0.1"
+description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+pycodestyle = ">=2.10.0"
+tomli = {version = "*", markers = "python_version < \"3.11\""}
+
+[[package]]
+name = "click"
+version = "8.1.3"
+description = "Composable command line interface toolkit"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+colorama = {version = "*", markers = "platform_system == \"Windows\""}
+
+[[package]]
+name = "colorama"
+version = "0.4.6"
+description = "Cross-platform colored terminal text."
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+
+[[package]]
+name = "flask"
+version = "2.2.2"
+description = "A simple framework for building complex web applications."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+click = ">=8.0"
+importlib-metadata = {version = ">=3.6.0", markers = "python_version < \"3.10\""}
+itsdangerous = ">=2.0"
+Jinja2 = ">=3.0"
+Werkzeug = ">=2.2.2"
+
+[package.extras]
+async = ["asgiref (>=3.2)"]
+dotenv = ["python-dotenv"]
+
+[[package]]
+name = "flask-sqlalchemy"
+version = "3.0.2"
+description = "Add SQLAlchemy support to your Flask application."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+Flask = ">=2.2"
+SQLAlchemy = ">=1.4.18"
+
+[[package]]
+name = "greenlet"
+version = "2.0.1"
+description = "Lightweight in-process concurrent programming"
+category = "main"
+optional = false
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
+
+[package.extras]
+docs = ["sphinx", "docutils (<0.18)"]
+test = ["objgraph", "psutil", "faulthandler"]
+
+[[package]]
+name = "importlib-metadata"
+version = "5.2.0"
+description = "Read metadata from Python packages"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+zipp = ">=0.5"
+
+[package.extras]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
+perf = ["ipython"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8", "importlib-resources (>=1.3)"]
+
+[[package]]
+name = "itsdangerous"
+version = "2.1.2"
+description = "Safely pass data to untrusted environments and back."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "jinja2"
+version = "3.1.2"
+description = "A very fast and expressive template engine."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
+[[package]]
+name = "markupsafe"
+version = "2.1.1"
+description = "Safely add untrusted strings to HTML/XML markup."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "py-bcrypt"
+version = "0.4"
+description = "bcrypt password hashing and key derivation"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "pycodestyle"
+version = "2.10.0"
+description = "Python style guide checker"
+category = "dev"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "sqlalchemy"
+version = "1.4.45"
+description = "Database Abstraction Library"
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+
+[package.dependencies]
+greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+
+[package.extras]
+aiomysql = ["greenlet (!=0.4.17)", "aiomysql"]
+aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"]
+asyncio = ["greenlet (!=0.4.17)"]
+asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3,!=0.2.4)"]
+mariadb_connector = ["mariadb (>=1.0.1,!=1.1.2)"]
+mssql = ["pyodbc"]
+mssql_pymssql = ["pymssql"]
+mssql_pyodbc = ["pyodbc"]
+mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"]
+mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"]
+mysql_connector = ["mysql-connector-python"]
+oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"]
+postgresql = ["psycopg2 (>=2.7)"]
+postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"]
+postgresql_pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"]
+postgresql_psycopg2binary = ["psycopg2-binary"]
+postgresql_psycopg2cffi = ["psycopg2cffi"]
+pymysql = ["pymysql (<1)", "pymysql"]
+sqlcipher = ["sqlcipher3-binary"]
+
+[[package]]
+name = "tomli"
+version = "2.0.1"
+description = "A lil' TOML parser"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "types-flask-sqlalchemy"
+version = "2.5.9"
+description = "Typing stubs for Flask-SQLAlchemy"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+types-SQLAlchemy = "*"
+
+[[package]]
+name = "types-sqlalchemy"
+version = "1.4.53.19"
+description = "Typing stubs for SQLAlchemy"
+category = "dev"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "werkzeug"
+version = "2.2.2"
+description = "The comprehensive WSGI web application library."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+MarkupSafe = ">=2.1.1"
+
+[package.extras]
+watchdog = ["watchdog"]
+
+[[package]]
+name = "zipp"
+version = "3.11.0"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "func-timeout", "jaraco.functools", "more-itertools", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
+
+[metadata]
+lock-version = "1.1"
+python-versions = "^3.9"
+content-hash = "54b3e8cb9fa3e9c6b85642bc519182772dac7ede4030fa8209e2510ccdbcd90c"
+
+[metadata.files]
+autopep8 = []
+click = [
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+    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
+]
+colorama = []
+flask = []
+flask-sqlalchemy = []
+greenlet = []
+importlib-metadata = []
+itsdangerous = []
+jinja2 = [
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+]
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+    {file = "MarkupSafe-2.1.1.tar.gz", hash = "sha256:7f91197cc9e48f989d12e4e6fbc46495c446636dfc81b9ccf50bb0ec74b91d4b"},
+]
+py-bcrypt = []
+pycodestyle = []
+sqlalchemy = []
+tomli = [
+    {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
+    {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
+]
+types-flask-sqlalchemy = []
+types-sqlalchemy = []
+werkzeug = []
+zipp = []

pyproject.toml

@@ -0,0 +1,19 @@
+[tool.poetry]
+name = "flask-sample"
+version = "0.1.0"
+description = ""
+authors = ["junikimm717 <68165832+junikimm717@users.noreply.github.com>"]
+
+[tool.poetry.dependencies]
+python = "^3.9"
+flask-sqlalchemy = "^3.0.2"
+Flask = "^2.2.2"
+py-bcrypt = "^0.4"
+
+[tool.poetry.dev-dependencies]
+autopep8 = "^2.0.1"
+types-Flask-SQLAlchemy = "^2.5.9"
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"

templates/admin.html

@@ -0,0 +1,5 @@
+{% extends "base.html" %}
+{% block content %}
+    <h1>Admin Dashboard</h1>
+    <p>You are {{user}}</p>
+{% endblock %}

templates/base.html

@@ -0,0 +1,28 @@
+<!DOCTYPE html>
+<html lang="en">
+	<head>
+		<meta charset="UTF-8" />
+		<meta http-equiv="X-UA-Compatible" content="IE=edge" />
+		<meta name="viewport" content="width=device-width, initial-scale=1.0" />
+		<title>DWalker Website</title>
+		<meta
+			name="description"
+			content="A website for aggregating and searching exposome data"
+		/>
+		<link rel="stylesheet" href="https://cdn.simplecss.org/simple.min.css" />
+	</head>
+	<body>
+		<header>
+			<nav>
+				<a href="{{ url_for('home') }}">Home</a>
+                {% if session.admin %}
+                    <a href="{{ url_for('admin_root') }}">Admin</a>
+                    <a href="{{ url_for('admin_logout') }}">Logout</a>
+                {% else %}
+                    <a href="{{ url_for('admin_login') }}">Login</a>
+                {% endif %}
+			</nav>
+		</header>
+		<main>{% block content %} {% endblock %}</main>
+	</body>
+</html>

templates/errors/403.html

@@ -0,0 +1,3 @@
+{% extends 'base.html' %} {%block content%}
+<h1>403 Forbidden</h1>
+{%endblock%}

templates/errors/404.html

@@ -0,0 +1,3 @@
+{% extends 'base.html' %} {%block content%}
+<h1>404 Not Found</h1>
+{%endblock%}

templates/index.html

@@ -0,0 +1,3 @@
+{% extends 'base.html' %} {%block content%}
+<h1>Exposome Database Website</h1>
+{%endblock%}

templates/login.html

@@ -0,0 +1,18 @@
+{% extends "base.html" %}
+{% block content %}
+    <h1>Admin Login</h1>
+    <form method="post">
+        <label for="username">Username:</label>
+        <input id="username" name="username" type="text" required="required">
+        <br>
+        <label for="password">Password:</label>
+        <input id="password" name="password" type="password" required="required">
+        <br>
+        <input type="submit" value="Submit">
+    </form>
+        {% if success %}
+            <p style="color:darkgreen">Login Successful!</p>
+        {% elif fail %}
+            <p style="color:darkred">Login Failed. Please try again.</p>
+        {% endif %}
+{% endblock %}

templates/register.html

@@ -0,0 +1,44 @@
+{% extends "base.html" %}
+{% block content %}
+    <h1>Admin Login</h1>
+    <script defer>
+    window.onload = () => {
+        const uname_el = document.getElementById("username")
+        const pw_el = document.getElementById("password")
+        const rec_el = document.getElementById("reconfirm")
+        function check_equal() {
+            const uname = uname_el.value
+            const pw = pw_el.value
+            const rec = rec_el.value
+            if (pw.length > 0 && rec === pw && uname.length > 0) {
+                console.log("happens!")
+                document.getElementById("matches").innerHTML = `<div style='color:darkgreen'>Matches!</div>`
+                document.getElementById("submit").disabled = false
+            } else {
+                document.getElementById("matches").innerHTML = `<div style='color:darkred'>Does not Match!</div>`
+                document.getElementById("submit").disabled = true
+            }
+        }
+        uname_el.addEventListener("input", check_equal)
+        pw_el.addEventListener("input", check_equal)
+        rec_el.addEventListener("input", check_equal)
+    }
+    </script>
+    <form method="post">
+        <label for="username">Username:</label>
+        <input id="username" name="username" type="text" required="required">
+        <br>
+        <label for="password">Password:</label>
+        <input id="password" name="password" type="password" required="required">
+        <br>
+        <label for="reconfirm">Reconfirm Password: <span id="matches"></span></label>
+        <input id="reconfirm" name="reconfirm" type="password" required="required">
+        <br>
+        <input type="submit" value="Submit" disabled="disabled" id="submit">
+    </form>
+        {% if success %}
+            <p style="color:darkgreen">Login Successful!</p>
+        {% elif fail %}
+            <p style="color:darkred">Login Failed. Please try again. {{fail}}</p>
+        {% endif %}
+{% endblock %}